V-SVA: A Shiny app for Visual Surrogate Variable Analysis

Download Tutorial
Download Test Expression
Download Test Metadata

1. Load Data

2a. Cell/Sample Filtering (Optional)

2b. Down-sample Cells (Optional)

2c. Gene Filtering and Normalization (Optional)

3. Specify Known Factors to Adjust For

4. SVA Analysis


Nathan Lawlor


Other Resources:

Graphing Options

Download Pairwise Plot

Download Heatmap

Marker Genes Table:

Download Marker Genes Table

Download Enrichment Analysis Plot

Gene Enrichment Analysis Table

Download Enrichment Analysis Results Table